rs51966288 SNP Detail

Summary

• ID
  rs51966288
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:58411673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ggcttaaat ttgtaatgca aattctgcct
  cccacgtgct ggtgttgaag acacgtggcc cagtgcccag ctAGGAGATT ATGTTTTAAA
  GTTTTTAATC CAGTGATACA AATGGATTTT TAAAGCTTTT TATTTGGAAA CAGCTTCAAA
  W
  TTATTAAATG ATAGGAAAAA TAGAACCAAT AGGAGCTTCC TGCCTTGACT CTCCCGTCCT
  AGTATTTTCC AATAAAGCAA CATATATTCT AATATACAGA TCTTGTTTGA AGCGggtagg
  gtagacctgg gagaatttag gaaagaaatg                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss135206876	ENSMUSSNP5149455	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss320783065	CHEV_3_58308174	CHEVERUD	SCREENING_POP	f	SNP			T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs51966288					SNP	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58411673 () rs orientation: forward

Symbol	Name	Function Class
Gm66340	predicted gene, 66340	903 bp upstream
Rr375034	regulatory region 375034	within coordinates
Rr577238	regulatory region 577238	312 bp distal