rs51966847 SNP Detail

Summary

• ID
  rs51966847
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110767071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGCT GGGCCTCCAG GATGAGGTCA
  S
  TCAATGGCAT CTCACAATGG GAACA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss136960248	ENSMUSSNP7202738	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss323194872	CHEV_9_110840507	CHEVERUD	SCREENING_POP	f	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs51966847					SNP	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110767071 () rs orientation: forward

Symbol	Name	Function Class
Cripto	cripto, EGF-CFC family member	1605 bp downstream
Rr192786	regulatory region 192786	271 bp distal
Rr192787	regulatory region 192787	530 bp proximal
Rr202609	regulatory region 202609	1799 bp distal
Rr202610	regulatory region 202610	304 bp distal
Rr207413	regulatory region 207413	71 bp distal