rs51967734 SNP Detail

Summary

• ID
  rs51967734
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:174315392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGGGTTG GTTACCCTTG
  GTGGAACAGG CCACCCAGAC AGGGCTGGAC CAATTGCTCT ACGGTCATAG GTCATCTCCA
  TCACCATTTC TCAGTGATGC CCACGCCCTC CTGTGCCTCC ACAACTTCCT GTTACATATT
  CCTCAGCAAT TACCACTCTG GAGTCATCTT GTTTATCTGT TAGCTCCCAT TGTAAGTCAT
  M
  CCCCAGAAAG CCAGCCCTGG CCTGTCTCCA TCATGGCACT CAGCACCTCT GGATAGCAGG
  GGTTTAAAGG TTATTGAAAA TGAAATAGTT ATTTGAGGAA TGAATTAATT AGGCCATTTA
  GTTTATCTGC TTGACTTCTA GTCTGTAGGC ACGTGAGGGT GAGGCTCTTG CTAGGCTTGT
  TCAGTGATTT CCTCCCTGTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148343982	ENSMUSSNP3410974	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	C
ss320627906	CHEV_2_174299100	CHEVERUD	SCREENING_POP	f	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51967734					SNP	A	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:174315392 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12865	CpG island 12865	127 bp distal
Gm38546	predicted gene, 38546	within coordinates
Prelid3b	PRELI domain containing 3B	658 bp upstream
Rr397557	regulatory region 397557	421 bp downstream
Rr572133	regulatory region 572133	712 bp distal
Rr572134	regulatory region 572134	976 bp distal
Rr572135	regulatory region 572135	609 bp distal
Rr572136	regulatory region 572136	581 bp distal
Rr572137	regulatory region 572137	404 bp distal
Rr572138	regulatory region 572138	within coordinates
Tssr28035	transcription start site region 28035	663 bp upstream
Tssr28036	transcription start site region 28036	580 bp upstream