rs51968096 SNP Detail

Summary

• ID
  rs51968096
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48655486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCATAGGTT TGCCCCTAGA
  TGATTCTAGA GCCCGTCAGG GAGTCAGTCA TTAACCATCT TGCACACGCA TGAGATATTC
  TGTTTCAAAC AAAAAGTGGA AGGTACCCAA GGACCAGAAC TTATCCTAAT GACCATGCAC
  ACGCTATGCT CCCTGCACTC CTGGAACTGC TTCCAAGCAA GTGGCTGTCT CCTCTGCAGC
  M
  CTGTCCCAAG CCCTCAACAC CACGGTGCTG CAGGGCATGG CCGGCCAGTC CTTGAGGGTG
  TCATGTACTT ATGACGCCTT GAAGCACTGG GGGAGACGCA AGGCCTGGTG TCGGCAGCTG
  GGTGAGGAGG GCCCATGCCA GCGTGTGGTG AGCACACACG GTGTGTGGCT GCTGGCCTTC
  CTGAAGAAGC GGAATGGGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss62767922	NES17350332	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	A		C	C	C		C
ss325408123	CHEV_17_48487783	CHEVERUD	SCREENING_POP	f	SNP									A				C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs51968096					SNP	C	C	C	C	C	C	C	A	A	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62767922	NES17350332	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48655486 () rs orientation: forward

Symbol	Name	Function Class
Rr335234	regulatory region 335234	1485 bp distal
Trem2	triggering receptor expressed on myeloid cells 2	within coordinates
Tssr145095	transcription start site region 145095	1965 bp downstream
Tssr145096	transcription start site region 145096	1932 bp downstream
Tssr145097	transcription start site region 145097	927 bp downstream
Tssr145098	transcription start site region 145098	585 bp downstream
Tssr145099	transcription start site region 145099	22 bp upstream
Tssr145100	transcription start site region 145100	51 bp upstream
Tssr145101	transcription start site region 145101	88 bp upstream
Tssr145102	transcription start site region 145102	187 bp upstream
Tssr148525	transcription start site region 148525	232 bp downstream