rs51969346 SNP Detail

Summary

• ID
  rs51969346
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:126220379 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCTCTAC AAAGTCTGTG
  CTTCGGCCCT GCCCTGGTAA AATAACAAGC AACTAACAGA TGTCAAAGCA ATGAATGATT
  TGGGCTAGGT AGGGTGGCTC ACACTTTTAA TATCAGCATT CAAGAGAGGC AGAGGCAGGC
  AGATCTCTAT GAGTTCAAGG CCTGACTTGT CTACAGAATT CCTGCACAGA CAAGGCTACA
  K
  AGTGAGATCC TATTTAAAAA TAAAAGGCCC ACTCCATTGC CACCAGGACA ATTTCCACAA
  AACCACCTGC CAAAAGAAAT ATCCGTGAGC CTGTTAGCTG GTGTGGCATT CCAGAGGAGA
  GATCAACAGA AGGAGGGGAG AGGGCCCAGC AGAGGAATGC TGAAGACAAG GCCTTTGACT
  CAGCCTTGCA GGTTGGGTGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145875067	ENSMUSSNP4481687	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51969346					SNP	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126220379 () rs orientation: forward

Symbol	Name	Function Class
Gm39087	predicted gene, 39087	492 bp upstream
Rr655535	regulatory region 655535	1348 bp distal
Rr655536	regulatory region 655536	253 bp proximal
Rr655537	regulatory region 655537	686 bp proximal
Rr655538	regulatory region 655538	1180 bp proximal
Tssr69045	transcription start site region 69045	1697 bp upstream