rs51970564 SNP Detail

Summary

• ID
  rs51970564
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:113396121 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTGTCTG TCTGTCTGTC
  TGTCTGTCTG TCTGTCTGTC TGTCTATCTG TCTATCTAAT CTATCCATTC ATTTGTTCAC
  TTAACATCAT TCCAGTTACA GCTGTCTCCT TTCTCTCCTC CCAGTCCCAG CCTCACAAGT
  CCCTCCAACC ATTACCCTTT GCCCATCTCC TCAGAGATGG GGAGCCCCCC TGGGGTATCA
  W
  TCTGCCTAGG GACATCAAGT CACAGCAGGA CTAAGCACAT CCTTTCCTAC TAAGGCCAAA
  CAAGGCAGCC CAAGCAGGGG AAGGGGATCC AATGGCAGGC AACAGAGTCA GAGACAGCTC
  CTGCTCCAAA TGTTAGGGTA ATACACACAT GAAGACCAAG CTGCACATCT GTTACACATG
  TGTAGGAAGT CTAGGTCCAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss138742513	ENSMUSSNP2917585	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51970564					SNP	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:113396121 () rs orientation: forward

Symbol	Name	Function Class
Igh	immunoglobulin heavy chain complex	within coordinates
Ighd4-1	immunoglobulin heavy diversity 4-1	1963 bp upstream
Ighg	Immunoglobulin heavy chain (gamma polypeptide)	within coordinates
Tssr118021	transcription start site region 118021	1898 bp upstream
Tssr118022	transcription start site region 118022	1869 bp upstream
Tssr118023	transcription start site region 118023	1706 bp upstream