rs51971103 SNP Detail

Summary

• ID
  rs51971103
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:73932905 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCTGCAGGA AGCTGGGTCT TGGGTTAAAG AGCTTGGAAT
  TTTGGTGACT ATTCATGTGG TCAAGTTGGA GAAGGCACGT TGCTTAGTAT TTTTATTGGC
  Y
  TCTCCCTTCC TTGGGAGATC ATTGTCTGTG GCCTCGCAAA TATATTTGCA AACTGCTGTT
  GCTGCTGCCT CAGCTGGTGC TGTTGGTGGT TGTTGGTGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146558482	ENSMUSSNP2827913	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss321164663	CHEV_4_73660572	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs51971103					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:73932905 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14388	CpG island 14388	424 bp distal
Frmd3	FERM domain containing 3	within coordinates
Rr101135	regulatory region 101135	within coordinates
Rr105564	regulatory region 105564	1696 bp proximal
Tssr37633	transcription start site region 37633	994 bp downstream