rs51971446 SNP Detail

Summary

• ID
  rs51971446
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:77739386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTGTGCCAG TTTCTATACT GTAACCTGTT CGGCTCCGGC
  TGGGTTTTAA TCTGGGACTC TAACGGAAGG GCCATGGGAG CGTTGTGCAG CAGCCTTGGG
  Y
  GCATACCCTG AATGGCAGTG TCTGGAGCAG GGTAGGCTCC TTATTACACC CCACTGACAA
  CACAGGCACA TAGCCAACAG CTCCTGGTGG GCCCGTGGCT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MOLF/EiJ	PWD/PhJ
ss52384824	NES15270429	PERLEGEN	MM_PANEL2	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	MOLF/EiJ	PWD/PhJ
rs51971446					SNP	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52384824	NES15270429	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:77739386 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1765	CpG island 1765	129 bp distal
Gm53590	predicted gene, 53590	within coordinates
Gm66732	predicted gene, 66732	within coordinates
Gm66819	predicted gene, 66819	153 bp downstream
Lrrc3	leucine rich repeat containing 3	1016 bp upstream
Rr434596	regulatory region 434596	1166 bp distal
Rr434597	regulatory region 434597	1027 bp distal
Rr434598	regulatory region 434598	45 bp distal
Rr434599	regulatory region 434599	within coordinates
Tssr98252	transcription start site region 98252	1091 bp upstream
Tssr98253	transcription start site region 98253	1023 bp upstream