rs51973258 SNP Detail

Summary

• ID
  rs51973258
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96435030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATAAGCA ACCGGGGGGT
  GAAGGGAATG ACTCACTTGG TAAAGTGTAT GCTGTGCAGA CATTAGGACC TGAGTTTAGA
  CACCCAGCAC CTACATCAGG GAGCAATCCA TGCCTGTAAT TCCAGTGGTC AGGGTCGGGG
  AGGGGGAACC AGGAAGATCC TGGGGCTCTC TGGCTAAATC AGTGGGCTCC AGGTTCACTG
  R
  GAGACCCGGG CTCAAAAAGT AAGGTGGAGA AGCAATGAGA AAAAACCCTT GATGTCAACC
  TCTGGCCTCT GCATGAATGT GCATCAGGTG GTGGAAGCAA GTGTTCAACT GTGTGCACAT
  GTGCACACAC ACACACACAC GCACAAACAC ACACATACAC AAACACATGC ACAAGCATGC
  ACCCCCACAT AAATACAACG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132681507	ENSMUSSNP1340727	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
ss323821015	CHEV_11_96405518	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51973258					SNP	G	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96435030 () rs orientation: forward

Symbol	Name	Function Class
Rr252638	regulatory region 252638	431 bp distal
Rr252639	regulatory region 252639	1572 bp proximal
Skap1	src family associated phosphoprotein 1	within coordinates
Tssr104542	transcription start site region 104542	1770 bp downstream
Tssr104543	transcription start site region 104543	515 bp upstream
Tssr104544	transcription start site region 104544	1169 bp upstream
Tssr104545	transcription start site region 104545	1222 bp upstream
Tssr104546	transcription start site region 104546	1230 bp upstream
Tssr104547	transcription start site region 104547	1272 bp upstream
Tssr104548	transcription start site region 104548	1366 bp upstream
Tssr104549	transcription start site region 104549	1379 bp upstream
Tssr104550	transcription start site region 104550	1437 bp upstream
Tssr104551	transcription start site region 104551	1465 bp upstream
Tssr104552	transcription start site region 104552	1486 bp upstream