rs51973377 SNP Detail

Summary

• ID
  rs51973377
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:30206660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGA GAGTACGTAG CGAAAAAAGG
  K
  TCTGGGCTTT TCTAGTCCTC ACGGC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss147925842	ENSMUSSNP6535532	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss325129940	CHEV_16_30387928	CHEVERUD	SCREENING_POP	f	SNP		T	G
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs51973377					SNP	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:30206660 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atp13a3	ATPase type 13A3			Intron
				Noncoding-Transcript-Variant
Gm61087	predicted gene, 61087			1001 bp upstream
Gm61089	predicted gene, 61089			1143 bp downstream
Rr370076	regulatory region 370076			1461 bp upstream
Rr514223	regulatory region 514223			within coordinates
Rr514224	regulatory region 514224			678 bp proximal
Rr514225	regulatory region 514225			1035 bp proximal
Rr514226	regulatory region 514226			1048 bp proximal
Rr514227	regulatory region 514227			1856 bp proximal
Tssr140714	transcription start site region 140714			848 bp downstream
Tssr140715	transcription start site region 140715			926 bp downstream
Tssr140716	transcription start site region 140716			964 bp downstream
Tssr140717	transcription start site region 140717			1470 bp downstream