rs51973534 SNP Detail

Summary

• ID
  rs51973534
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:182097336 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTGGAAGA GCAGCAGTCA
  CCCCTGACCA CTGAGACATC TCTCCAGCCC ATGAACAATG CATTTTAAAA TGACAGCAGT
  TTTGCCTTTT AGCACAATTT TTAAGGACAC GATGTCATCA ATAGTTTGGG CAGCAGCGCT
  AACTGATCTT GACAGGGACA GCTGTGACTG ATCTCGGTGC AGTTCATCCA TCTAAGATTC
  K
  GATATCCCCA TGGTCCACAG GAACCTGCAC CTCTCAGACA CTGGCAGTGA TGAAGAGACC
  TGACTTTCTT TGCTCTCTAA GCCATTGCCG TGGCCTGGTG AGTAGGCTGA GAGATACGCT
  CAGAGAAAGT ATCTACCCCA GCCATCCTGT CTCCTGATCT TGTTCGTCTT TCCTATGGCT
  GTGCCGAGCA GTTGAGGCTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss60352037	NES15855398	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs51973534					SNP	T	T	T	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60352037	NES15855398	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:182097336 () rs orientation: forward

Symbol	Name	Function Class
Rr424897	regulatory region 424897	1122 bp distal
Rr424898	regulatory region 424898	1167 bp proximal