rs51973927 SNP Detail

Summary

• ID
  rs51973927
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50321278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTCCTGCTA TAAACTTTCA TTCATTACAA ATAATGTTTT
  TCTTTTATTT ACTCAAAGTA CTCTTCTACT CTAAGATAAC ATTATATTAT TTAGTAAGTA
  R
  AGTGACAGAG AGATTATAGG CATAGAATAA TTCCTAAATT CTTTGAAACA AGATCCTTCC
  AATTTTACAA GTAGGAACCT GCAGTGTCTT GTCTCCTGG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135158401	ENSMUSSNP2011496	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
ss320757158	CHEV_3_50170751	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51973927					SNP	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50321278 () rs orientation: forward

Symbol	Name	Function Class
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	within coordinates
Tssr33101	transcription start site region 33101	399 bp upstream
Tssr33102	transcription start site region 33102	376 bp upstream
Tssr33103	transcription start site region 33103	302 bp upstream
Tssr33104	transcription start site region 33104	288 bp upstream
Tssr33105	transcription start site region 33105	204 bp upstream
Tssr33106	transcription start site region 33106	183 bp upstream
Tssr33107	transcription start site region 33107	158 bp upstream
Tssr33108	transcription start site region 33108	88 bp upstream
Tssr33109	transcription start site region 33109	30 bp upstream
Tssr33110	transcription start site region 33110	13 bp downstream
Tssr33111	transcription start site region 33111	46 bp downstream
Tssr33112	transcription start site region 33112	85 bp downstream
Tssr33113	transcription start site region 33113	131 bp downstream
Tssr33114	transcription start site region 33114	155 bp downstream
Tssr33115	transcription start site region 33115	214 bp downstream
Tssr33116	transcription start site region 33116	619 bp downstream
Tssr33117	transcription start site region 33117	849 bp downstream
Tssr33118	transcription start site region 33118	876 bp downstream
Tssr33119	transcription start site region 33119	902 bp downstream
Tssr33120	transcription start site region 33120	1452 bp downstream
Tssr33121	transcription start site region 33121	1745 bp downstream
Tssr33122	transcription start site region 33122	1839 bp downstream