rs51974964 SNP Detail

Summary

• ID
  rs51974964
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52651422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTACTTTA TTTAACACTA
  CAGAGAGATA ACAAAAATCG AGGTTGCAAA ATATGGAACG CTTCACGAAT TTGCGTGTCA
  TCCTTGCGCA GGGGCCATGC TAATCTTCTC TGTATCGTTC CAATTTTAGT ATATGTGCTG
  CCGAAGCGAG CACGATCTTA AGGCCTAACC GTGGACTATA TAAGGACTCA GAAAATCAGA
  W
  TCTTTAACTT AGGGTGATTT TAGTGCTTAC GATCCTCGAA CTCCTCCGTG CACCCTAAAA
  CGAAGGAGAA ATTTTTCAGC AGAACTGTGT GGCTAGACTC TTGAAATCCC CCTGCTGCTG
  AGGGAATTGC GCAGGCAGCG TGGGTCCGTG TGGTTTACCA CGGGGGGGGG TATGCAAATT
  AGAGCCCGGT GCATGTCGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss52423973	NES15399388	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T		T	T		A
ss324040182	CHEV_12_53705626	CHEVERUD	SCREENING_POP	f	SNP										T			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs51974964					SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52423973	NES15399388	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52651422 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4596	CpG island 4596	846 bp distal
Cpgi4597	CpG island 4597	2 bp proximal
Gm23296	predicted gene, 23296	48 bp upstream
Gm24859	predicted gene, 24859	745 bp downstream
Gm35239	predicted gene, 35239	198 bp upstream
Gm59577	predicted gene, 59577	within coordinates
Rr369517	regulatory region 369517	45 bp upstream
Rr403283	regulatory region 403283	685 bp downstream
Rr403284	regulatory region 403284	within coordinates
Rr466026	regulatory region 466026	1756 bp distal
Rr466027	regulatory region 466027	within coordinates
Rr466028	regulatory region 466028	244 bp proximal