rs51974994 SNP Detail

Summary

• ID
  rs51974994
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29980449 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCGTAGCC GCGGTAGCAC
  GAGGAACATT TTGTACGCAT GCGCCCTCAG TTTCCCCTGT CACGTGTTGC AGTGTTGCTC
  TTCCCTGGGA TGACGTGAGG CGGATGGATT GCTCGGGGAC CCGGACAGGG TTTGGCCCAG
  ACTCAAGTGT TATTGCTGAC TGGGCAGGAC TGGCCAGGGT AGGACAGCTA CACATAAGTA
  S
  ATTAGGGCTC CAACACTTTG GGGCGCCTGG GCAGGGACAA TTGGCCTGGG AGATTCGAAC
  ATGGGGCGTG GCCCTGGGAG GGGCGGGGTT GGTCCAGCTT TGAGTCTTGG GAGCTACTGC
  TATGAAGCTG TAGATAGTTC ATTGCTACCT TGGGAGCGGA AGGGGTGAGA GGGATGTGCA
  CACACATCAT TCTCCCTGTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60991467	NES16140585	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51974994					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60991467	NES16140585	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29980449 () rs orientation: forward

Symbol	Name	Function Class
1700020L13Rik	RIKEN cDNA 1700020L13 gene	9 bp upstream
Cpgi18786	CpG island 18786	4 bp distal
Rr400235	regulatory region 400235	457 bp downstream
Rr644765	regulatory region 644765	915 bp distal
Rr644766	regulatory region 644766	960 bp distal
Rr644767	regulatory region 644767	127 bp distal
Rr644768	regulatory region 644768	within coordinates
Rr644769	regulatory region 644769	821 bp proximal
Rr644770	regulatory region 644770	1212 bp proximal
Tssr65667	transcription start site region 65667	882 bp downstream
Tssr65668	transcription start site region 65668	836 bp downstream
Tssr65669	transcription start site region 65669	440 bp downstream
Tssr71721	transcription start site region 71721	600 bp upstream
Wdr62	WD repeat domain 62	605 bp upstream