rs51975499 SNP Detail

Summary

• ID
  rs51975499
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:117660099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGAT AGGAAGAAAC ATATATACTG
  M
  ATGTTTTCCC CAAGAATACT TAGAG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135694684	ENSMUSSNP249434	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	A
ss320900597	CHEV_3_117569368	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51975499					SNP	A	C	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:117660099 () rs orientation: forward

Symbol	Name	Function Class
Rr583873	regulatory region 583873	384 bp distal
Rr583874	regulatory region 583874	448 bp proximal
Snx7	sorting nexin 7	Intron