rs51976702 SNP Detail

Summary

• ID
  rs51976702
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:119462205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATTGAGAA AGGCAACCAA
  CATCAGCCTC TGGCCTCGAC ATGCATGTGT ACTTAAATGT GCACACATGC ACACATGTGG
  ACATACACAT GTGTATACAC CACACATACA AACACATACA CACACACACA CACACACACA
  CACACACACA CACACAAAGA TCAAGGGCCG GGAAGCTGAT ATGATCTACT TCTCAGTACC
  Y
  GGAGGACAGC CAGTAGCAGA TGTGAAGACA TGGAGTGATT GCACCTCTGA GGCTCAAGGC
  AAGAGATGTT TGAAAACCGA GCCCAGGACC CACCCATGAG GGCAAGCGAA TCAAAGAGGA
  GAGGGTGCAG AGGTCCAAGC AGAGAGGCAT GGTAGGCTGG ACGTTTTCAA GGGAGGGCAC
  AGTGATTAAG AGGAGAAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60832050	NES16023353	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51976702					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60832050	NES16023353	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:119462205 () rs orientation: forward

Symbol	Name	Function Class
Gm42016	predicted gene, 42016	1812 bp upstream
Gm57254	predicted gene, 57254	within coordinates
Gm73317	predicted gene, 73317	within coordinates
Tssr48449	transcription start site region 48449	1869 bp upstream