rs51977909 SNP Detail

Summary

• ID
  rs51977909
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68913795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      G GTTCTGGAAG ATATGAGAGT GAGCGGAAAA CTTGCGTTGT
  GAGTTTCTGT GTTTTAGAGT AGTACTGACC TCTTTCTCAT ATTTCCGCTG AAAGCGGCAT
  R
  GGTGCTGAGC GCCTCTGCGC CCTTAGACTG GAGTGAATGT GATGTGGAGT TGCGTGACTC
  GCCCTTTACT GTTGGATTGT CTTTTGGGGC GCAATACTAA T                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss135264502	ENSMUSSNP1958310	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs51977909					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68913795 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13255	CpG island 13255	within coordinates
Ift80	intraflagellar transport 80	1903 bp upstream
Rr397713	regulatory region 397713	1673 bp downstream
Smc4	structural maintenance of chromosomes 4	within coordinates
Tssr29506	transcription start site region 29506	1731 bp downstream
Tssr29507	transcription start site region 29507	1441 bp downstream
Tssr29508	transcription start site region 29508	1320 bp downstream
Tssr29509	transcription start site region 29509	1149 bp downstream
Tssr29510	transcription start site region 29510	1108 bp downstream
Tssr29511	transcription start site region 29511	977 bp downstream
Tssr29512	transcription start site region 29512	720 bp downstream
Tssr29513	transcription start site region 29513	516 bp downstream
Tssr29514	transcription start site region 29514	390 bp downstream
Tssr33517	transcription start site region 33517	1995 bp upstream
Tssr33518	transcription start site region 33518	1963 bp upstream
Tssr33519	transcription start site region 33519	1917 bp upstream
Tssr33520	transcription start site region 33520	1898 bp upstream
Tssr33521	transcription start site region 33521	1877 bp upstream
Tssr33522	transcription start site region 33522	33 bp upstream