rs51978116 SNP Detail

Summary

• ID
  rs51978116
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:75139360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGGCTTG CTTCAGGACA
  CCCTTTCCCC ACCCTGCAGC AGACAGCAGG CATGGTGCTT CCAGACCTCA GAGCCACTGA
  AACTGCTGAA ACTGTTTTAA GGCTAGCTCC AATAAGGATG ACACAGAATG ACAACTGTCC
  TGCAGGAGCA TCAGCCCTCT TCCCAGAGAA GCAGTCAACT CATGCAGCCA ATCTGTGAAA
  Y
  GTAGCCGACA TTTTTCTTGG GAGTTCTGTA TGCATCTCCT GAGAGTATGG GATGCCTATC
  CGTGCTGCAC TGAGATCTGG AGCCTGGGGT ATTCATAGCG GATTTCTCTG ACTATTGCTA
  TGACCTAAGA CACTGGCTGG CCATATATTC TGACTCACTG TTCTCTAACC CCTGTGTGTG
  AGTGGTTCCT GGAGAATGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61182008	NES16686079	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51978116					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61182008	NES16686079	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:75139360 () rs orientation: forward

Symbol	Name	Function Class
Gm52777	predicted gene, 52777	1508 bp downstream
Rr613376	regulatory region 613376	971 bp proximal
Tssr46681	transcription start site region 46681	1179 bp upstream