rs51979251 SNP Detail

Summary

• ID
  rs51979251
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:124046844 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCATG TGTGGCTGTC GAGGACCTCG
  M
  GTGGGCCTTG GTTCTGTACA CTGTG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60835994	NES16018297	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51979251					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60835994	NES16018297	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:124046844 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16594	CpG island 16594	907 bp distal
Denr	density-regulated protein	within coordinates
Rr124363	regulatory region 124363	43 bp distal
Rr399353	regulatory region 399353	1448 bp downstream
Tssr48807	transcription start site region 48807	1584 bp downstream
Tssr48808	transcription start site region 48808	1571 bp downstream
Tssr48809	transcription start site region 48809	1489 bp downstream
Tssr48810	transcription start site region 48810	1466 bp downstream
Tssr48811	transcription start site region 48811	1394 bp downstream
Tssr48812	transcription start site region 48812	1221 bp downstream
Tssr48813	transcription start site region 48813	1210 bp downstream
Tssr48814	transcription start site region 48814	1194 bp downstream
Tssr48815	transcription start site region 48815	1174 bp downstream
Tssr48816	transcription start site region 48816	1148 bp downstream
Tssr48817	transcription start site region 48817	667 bp downstream
Tssr48818	transcription start site region 48818	593 bp downstream
Tssr48819	transcription start site region 48819	309 bp upstream
Tssr48820	transcription start site region 48820	343 bp upstream
Tssr53283	transcription start site region 53283	1712 bp downstream