rs51979717 SNP Detail

Summary

• ID
  rs51979717
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79158735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCAAGCCGG CCTGCGGAGC CGGGCGGGGA GCGCTCAGCC
  GTGAGCCCCG GCACAGTCTT GCCCGGATTG ATGCGCCCTC AAGGGCCCCC CCCCGAGAGC
  M
  GGAGTGGTCC GGAGAACCGC TGGGTTTTCT CCCATCCGGG TGTCTACACC CAGAACAGCG
  GCCCTTTGGA GGCTTGCGGC GCCATTTTAA TCGCCTTCT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145132882	ENSMUSSNP643728	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51979717					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79158735 () rs orientation: forward

Symbol	Name	Function Class
A330074H02Rik	RIKEN cDNA A330074H02 gene	1375 bp upstream
Cpgi19299	CpG island 19299	within coordinates
Gm72212	predicted gene, 72212	within coordinates
Mir9-3hg	Mir9-3 host gene	within coordinates
Rr649634	regulatory region 649634	1227 bp distal
Rr649635	regulatory region 649635	within coordinates
Rr649636	regulatory region 649636	288 bp proximal
Rr649637	regulatory region 649637	923 bp proximal