rs51980722 SNP Detail

Summary

• ID
  rs51980722
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99142597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCAGCTG TGGTTCCTCT
  GGGGGTTGAC GAGCAGTGAT GGTCGGGAGA CTGGAGGCTA GGTGTGGCTG CTTAGACATC
  TCCCTGGCTT ACGGTTATAG ATCAAAATGG TTGGTCAGTC AATAGCAGAA ACACATCAAA
  CATCACAGAG CTTGGGAGCA TTGAGTGACT GCACAGTGTG TTCACAAATG CCTTCTTTGC
  Y
  TGTTCTTGGA CTTTGAGGAT GGCACCTTCA GAAGCAAGCA AAGAGACTTC TGAGGTAGCC
  CAAGCTTGTC TGAACTCACA GTGAGCAAGA CGATTTCCAG GAATGATCCA TGAAGTTTCT
  AAACATCAAA ATCCAGTACA GAACATTAAG ATATAGGTTT TGAAATGTGA ACAAATAAAA
  CGATTAATTT AAAAAAAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61445184	NES16826083	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51980722					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61445184	NES16826083	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99142597 () rs orientation: forward

Symbol	Name	Function Class
Cep70	centrosomal protein 70	within coordinates
Gm18914	predicted gene, 18914	401 bp downstream
Gm47199	predicted gene, 47199	337 bp upstream