rs51980976 SNP Detail

Summary

• ID
  rs51980976
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41495744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATGAGTGG AACGCTCTCC
  TGTGCCTCCT AGGAGCACAG TTAGAATTCA GTTCACAGGG CTCAGTGGCT CACCATTTTT
  TACCTAGCTG AAACACACAG ACACAGACAC ACACACAAAA CCACCTCCTT TTTAAAAAGT
  CTTGCTTTTT TTTTTTTTTT TTTTTGGTCT GTTCAAAATC AATGCAGTTG AAATTTAACA
  K
  CTTAAGCAAG CCCACTGATA ACAAGAGGAA CCAGCTGAAA CCCGTTTTGC AATATCTTGC
  CCCTCAAAGA AAAATACAGA AAATGCTTAA TTTTCAAATC TCTAATTGCT CGCTTCCTTC
  CTTCCTTCCT TCCTTCCTTC TTTCCTTCCT TTCTACCTTC TTTTTTCTTT CTTTCTTTCT
  TTCTTTTTTC TTTCTTTCTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61386143	NES16764681	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51980976					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61386143	NES16764681	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41495744 () rs orientation: forward

Symbol	Name	Function Class
Gm28119	predicted gene 28119	1596 bp downstream
Gm69589	predicted gene, 69589	within coordinates
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Rr677067	regulatory region 677067	1728 bp distal
Rr677068	regulatory region 677068	within coordinates
Rr677069	regulatory region 677069	340 bp proximal
Tssr84528	transcription start site region 84528	1406 bp downstream
Tssr84529	transcription start site region 84529	33 bp downstream
Tssr84530	transcription start site region 84530	943 bp upstream