rs51982252 SNP Detail

Summary

• ID
  rs51982252
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69559393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAGAATCCG AATAGGGTCT CTCATAAATT TCTTGGTCAC
  CTCAAGGACA TCAGAAGGCA TTGTAGCAGA CAACAAAACT ACCTAATGGG GAAAACAGCA
  R
  CCATGATGAG GGCACTGTAC ATTCCTCAGA TCACAACCAA GCCCCTTGTG TCCTATCAAC
  CTCGCCATTT GTCCACCTGT GTGTTGCTGT TGAGCTTCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132359929	ENSMUSSNP710431	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss323730986	CHEV_11_69482069	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51982252					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69559393 () rs orientation: forward

Symbol	Name	Function Class
Eif4a1	eukaryotic translation initiation factor 4A1	within coordinates
Gm22988	predicted gene, 22988	1068 bp downstream
Gm24029	predicted gene, 24029	591 bp upstream
Gm25835	predicted gene, 25835	285 bp downstream
Gm73992	predicted gene, 73992	within coordinates
Rr450061	regulatory region 450061	1924 bp distal
Tssr108764	transcription start site region 108764	1312 bp upstream
Tssr108765	transcription start site region 108765	1181 bp upstream
Tssr108766	transcription start site region 108766	424 bp downstream