rs51982630 SNP Detail

Summary

• ID
  rs51982630
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:5642383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTGAGAC AAATGAATTC
  CATGCACAGG CCAATGGCCC ATTTCTTTGG AACAATACTC TAAGCACAGG AAAATTCTAA
  TTAAAAAAAA AAAAACTAAA ACAAAAACCA AAAAACATTA GTGTGGTGAA TTTCCAGAAG
  ACTACGGTAG CCCTTCAGAT TTTGTCTTGA AAAGACTGAT CCTAGATTAG CAGACAATGG
  R
  GAGTTGTAAA AGTACACTTA TTGTACTAAC AGCTAAGACA GAAAATGTAC TAGGAGATTC
  TGGTTTAGAC ACTATTGTTT TACTCTTGTT CTGTGAACAC ATCTCTTATT GGGTTTGGAG
  TATAATATGA TTTTATATTG AAAAGTAACA CCCTCAATGA GATCCTTTAA TACCATTAAA
  ACCCAGGGTT TTGTTGTTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss145954947	ENSMUSSNP1151570	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs51982630					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:5642383 () rs orientation: forward

Symbol	Name	Function Class
4930423M02Rik	RIKEN cDNA 4930423M02 gene	99 bp downstream
Cpgi13998	CpG island 13998	1442 bp proximal
Fam110b	family with sequence similarity 110, member B	1626 bp upstream
Tssr36378	transcription start site region 36378	1701 bp upstream
Tssr36379	transcription start site region 36379	1750 bp upstream
Tssr36380	transcription start site region 36380	1833 bp upstream
Tssr36381	transcription start site region 36381	1885 bp upstream