rs51982989 SNP Detail

Summary

• ID
  rs51982989
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146156130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTGCGAGT TACCCGGGTC
  AAGACTGTTT ACCTAGCCCT TCCTAGCACT GGAGTGTAAG GAAGACCCCT GTCACATCTT
  ACATTTACTC ATAGGTAGTG CCCCCAGCAG CCGGGGTGGG ATCCCAGTCA ATTGGCTGCA
  AGTCCCACTT CTCCACAAAG TCCAGCATCA GCCCCGCCTT CTAGGGCCCA CCTACCAAGC
  R
  GCAGGCTGGG TCGCTCTCCG TTTAGCATCA GGCCACGCCC CTCAGCAGAG ACTCCGCCCC
  GCCTGCCCAT AGGACATCAG GGCCCGCCCT TCAAGAGGCG TCATTCCCGC AGCCTCCACC
  CCAGGCATGG CGCTGTGTGG CCTCCCGGAA TTCACTCTGC TGCTGCTGCC GCTGTTGGCA
  CGGCTCTCGG CCGGGGACTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss136044570	ENSMUSSNP5324849	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs51982989					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146156130 () rs orientation: forward

Symbol	Name	Function Class
Ctbs	chitobiase	74 bp upstream
Rr398117	regulatory region 398117	within coordinates
Rr587029	regulatory region 587029	within coordinates
Rr587030	regulatory region 587030	1077 bp proximal
Tssr32348	transcription start site region 32348	92 bp upstream
Tssr32349	transcription start site region 32349	143 bp upstream
Tssr32350	transcription start site region 32350	1248 bp upstream