rs51983238 SNP Detail

Summary

• ID
  rs51983238
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24658345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGTGGATGT CAGGATGCTG ACTGACCTCC AGGGAGGTCG
  GGCCTGGATG TAGGGGGACT GTAAACCTCA GGCCATGCAC TGCTCCTACT AATGTTCCTT
  Y
  CTGTGGGCAC ATGGGCCTGA ACCCTGGCAA CTGAAAGGCA CGTTAATTGG GGGGCACACT
  GCTGGCAAGA AGCCCCACAA CCTTTGGTGT AGTGGAGGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148093841	ENSMUSSNP1495708	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51983238					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24658345 () rs orientation: forward

Symbol	Name	Function Class
Agap3	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3	within coordinates
Cpgi15603	CpG island 15603	29 bp distal
Gm10472	predicted gene 10472	1638 bp upstream
Rr608324	regulatory region 608324	1130 bp distal
Rr608325	regulatory region 608325	233 bp distal
Rr608326	regulatory region 608326	217 bp proximal
Tssr45426	transcription start site region 45426	1378 bp downstream
Tssr45427	transcription start site region 45427	1357 bp downstream
Tssr50327	transcription start site region 50327	1601 bp upstream