rs51984460 SNP Detail

Summary

• ID
  rs51984460
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:113393742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACTCACCT GACCTGAGTG
  ACCTGAGCCC CCTGGTCCTA GACATCAGAG TAATTATAGA CCCAGTGAAG TAGCCCTTCA
  TCTGGGGCCA ACCAAACCCA TCCCAAAGTC CCTTGGCGTC CCCAGTGGCA TCCAAGCCTC
  AGAAACTCAG ATGTTTGGAG AGATCTCCAC CTTAATTCAA CTGGATGGGC CCATCTGTAG
  R
  ATGGTAATCT TTCAGGCTAG CCTTGGCTAG CATAGTGAGA CCTGTGACAA GAGAAGAAGG
  AAACAGGAGA AGGAGAAAGG AAACAAGAGA GGGACCTGCA CCTATCCTGT CCTCTCAGTC
  AACTCCACCT GCCTGCTCTG TCCGGGGATC CTCTTGGTAA GTCCTTGGCA GGACATTGCA
  TCCACCCTTC TGATGCTTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss138742412	ENSMUSSNP4194305	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs51984460					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:113393742 () rs orientation: forward

Symbol	Name	Function Class
Igh	immunoglobulin heavy chain complex	within coordinates
Ighd4-1	immunoglobulin heavy diversity 4-1	406 bp downstream
Ighg	Immunoglobulin heavy chain (gamma polypeptide)	within coordinates
Ighj1	immunoglobulin heavy joining 1	289 bp upstream
Ighj2	immunoglobulin heavy joining 2	607 bp upstream
Ighj3	immunoglobulin heavy joining 3	990 bp upstream
Ighj4	immunoglobulin heavy joining 4	1555 bp upstream
Tssr115504	transcription start site region 115504	105 bp upstream
Tssr118005	transcription start site region 118005	1575 bp upstream
Tssr118006	transcription start site region 118006	1544 bp upstream
Tssr118007	transcription start site region 118007	1498 bp upstream
Tssr118008	transcription start site region 118008	1471 bp upstream
Tssr118009	transcription start site region 118009	1460 bp upstream
Tssr118010	transcription start site region 118010	1322 bp upstream
Tssr118011	transcription start site region 118011	1224 bp upstream
Tssr118012	transcription start site region 118012	989 bp upstream
Tssr118013	transcription start site region 118013	974 bp upstream
Tssr118014	transcription start site region 118014	870 bp upstream
Tssr118015	transcription start site region 118015	774 bp upstream
Tssr118016	transcription start site region 118016	620 bp upstream
Tssr118017	transcription start site region 118017	280 bp upstream
Tssr118018	transcription start site region 118018	254 bp downstream
Tssr118019	transcription start site region 118019	271 bp downstream
Tssr118020	transcription start site region 118020	327 bp downstream
Tssr118021	transcription start site region 118021	467 bp downstream
Tssr118022	transcription start site region 118022	499 bp downstream
Tssr118023	transcription start site region 118023	664 bp downstream