rs51984472 SNP Detail

Summary

• ID
  rs51984472
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:10609027 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTTATGT GTATGTATAT
  TGTGGACACC CAAGCCTTCA AGTCAGTTCT CTCCTCCCAC ATGATCAGAG ATTAAACTCA
  GCTTGTCAAA GGTTTCGGCC CCTCATTCCT ACTTTTCAAA AATTTAGATT GGTAGAGAAG
  GGATAGAGGT CACATCTTAT TATATTACTA AATAAGATAC TGTTTTGCGC TGAGCATTAG
  Y
  GGCACTAGCC TTTAATCCCA GCTCTGGGAA AGCTGAGGCA GGTGGATCTG AGTTCCAGGC
  CAGCCTGAAT TACAAGGTGA ATCTCTGAAA AGGGAAAAGA GGAAAAAAAG CTATTTTGCA
  ATTTGTAATA CCACTTAGGT ACTATATGCT GCCATTGCTT CCTGCTACAA GAAACTCATT
  CCAGCTGACT TCTTCCATCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146607041	ENSMUSSNP2725468	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss325524288	CHEV_18_10609025	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51984472					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:10609027 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9702	CpG island 9702	405 bp proximal
Esco1	establishment of sister chromatid cohesion N-acetyltransferase 1	within coordinates
Rr533778	regulatory region 533778	97 bp proximal
Rr533779	regulatory region 533779	728 bp proximal
Rr533780	regulatory region 533780	1072 bp proximal
Rr533781	regulatory region 533781	1088 bp proximal
Rr533782	regulatory region 533782	1394 bp proximal
Tssr152429	transcription start site region 152429	1021 bp downstream
Tssr152430	transcription start site region 152430	1097 bp downstream
Tssr152431	transcription start site region 152431	1242 bp downstream
Tssr152432	transcription start site region 152432	1274 bp downstream
Tssr152433	transcription start site region 152433	1319 bp downstream