rs51985832 SNP Detail

Summary

• ID
  rs51985832
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:88969362 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTTTGTGA AATCTCTTAA
  CTTCCTTTCC TGGCAGTCCT GAAGTTCAGT GGACTCTTTT GTACACTTAA CCATAAAACC
  AAACCTGGAA CCAACACTTT CGGACATCTA TCGTATTCCC TTAACCTTAG AGTTTGCATC
  TTAGGTGGAG AAGATGTGGA ACTTAGCAGA TAGTGGCAGG TATCAGTCAG GGTGTGGCTG
  Y
  GGCTGCCTCC CTTTCTCTTC CAGCAGAAGG AGCCACCTTC CAAAGCTGGG GGAGAGAGAG
  AGAATGGGGG GGAGAGGAAG AGAGAGGGAA GGAGGGAGAG AGAGAGAGAG AGAGAGAGAG
  AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGATTG GAGAAGGCAA
  TAAGAAGAGG GAGGGTAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61911679	NES17093107	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51985832					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61911679	NES17093107	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:88969362 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5919	CpG island 5919	within coordinates
Edil3	EGF-like repeats and discoidin I-like domains 3	229 bp upstream
Rr483401	regulatory region 483401	within coordinates
Rr483402	regulatory region 483402	16 bp proximal
Tssr120562	transcription start site region 120562	231 bp upstream
Tssr120563	transcription start site region 120563	300 bp upstream
Tssr120564	transcription start site region 120564	339 bp upstream
Tssr120565	transcription start site region 120565	351 bp upstream
Tssr120566	transcription start site region 120566	363 bp upstream
Tssr120567	transcription start site region 120567	426 bp upstream
Tssr120568	transcription start site region 120568	436 bp upstream
Tssr120569	transcription start site region 120569	465 bp upstream
Tssr120570	transcription start site region 120570	489 bp upstream
Tssr120571	transcription start site region 120571	507 bp upstream
Tssr120572	transcription start site region 120572	639 bp upstream
Tssr120573	transcription start site region 120573	673 bp upstream
Tssr120574	transcription start site region 120574	700 bp upstream
Tssr123374	transcription start site region 123374	531 bp downstream