rs51986646 SNP Detail

Summary

• ID
  rs51986646
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:130369140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTGCATTT GTTCATCGGT
  GCCTCATACT AATCTCTGTT CTTGTCATTC GTGTCACACC CACCAACCCT GACACCGTTC
  CCAGGGAGCA TCTGGCTTAG ACGGAAAGCC AGGATCCCGG GTGAGTCGGC CCCGCGTCCT
  GCTCCGACGT GCTCCGTGGA TGTGAATCAC GTGCTGGGAA CGAAAGACCC CTTCGTTCCT
  Y
  GTGGTCTTTC CAGATGCTGA GGCGTCACTT AGGGCCAGAA TCAGAGGGGG GAGGTAGATG
  AGGATGGTGG AGAGGGAGAC AGGAGGAGAG AGAAGGGGTC GCAACTCGAA AGTTTAGCCT
  GGGCTGCCAG AACATTTTCA GAAGCCCAAA CTTGAGGGTA GATCATTTAC TCAGTGAGAA
  AATGACCGCT CCAGTTGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss135896424	ENSMUSSNP519766	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs51986646					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130369140 () rs orientation: forward

Symbol	Name	Function Class
Col25a1	collagen, type XXV, alpha 1	Intron
Cpgi13824	CpG island 13824	12 bp distal
Rr585176	regulatory region 585176	528 bp distal
Rr585177	regulatory region 585177	1303 bp proximal
Rr585178	regulatory region 585178	1392 bp proximal