rs51987056 SNP Detail

Summary

• ID
  rs51987056
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:76023414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CTTGACTGGC ACTCTTTCCT GTCCTTTTCA TGAGTCACCT
  ACTCTGACAA ACACCCCACC TTGTTTTCCT TCCTATTATG CAGTTCCAGG AAATCTCACC
  Y
  TTTGCTTGTT CTGAAGCTGA GACTGGCCTA GAACTCAGAA TTCTACTGCC TCCACTTTCT
  TTTTTTTTTT TTTTTTTTTT TAAAGATTTA TTTATTTATT G                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52665153	NES15472137	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	C	T	C	C	T	T	C	T	C	C	C
ss144640736	ENSMUSSNP6550445	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51987056					SNP	T	T	T	C	T	C	T	C	C	T	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52665153	NES15472137	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:76023414 () rs orientation: forward

Symbol	Name	Function Class
Rhobtb3	Rho-related BTB domain containing 3	within coordinates
Rr273737	regulatory region 273737	187 bp proximal
Rr277199	regulatory region 277199	13 bp distal
Rr277200	regulatory region 277200	187 bp proximal
Rr277201	regulatory region 277201	987 bp proximal
Rr277202	regulatory region 277202	1387 bp proximal