rs51987161 SNP Detail

Summary

• ID
  rs51987161
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:27257157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAT CACCTTGGAG TGGTGGAACG
  W
  ACGCTGCAGA ACTCACTATA GACCA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145408421	ENSMUSSNP2368352	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss325345386	CHEV_17_27175128	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51987161					SNP	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:27257157 () rs orientation: forward

Symbol	Name	Function Class
Ggnbp1	gametogenetin binding protein 1	1805 bp downstream
Gm50253	predicted gene, 50253	1805 bp downstream
Gm65707	predicted gene, 65707	744 bp downstream
Rr330035	regulatory region 330035	557 bp distal
Rr392460	regulatory region 392460	within coordinates
Tssr143302	transcription start site region 143302	356 bp downstream
Tssr143303	transcription start site region 143303	47 bp downstream
Tssr143304	transcription start site region 143304	438 bp upstream
Tssr146997	transcription start site region 146997	254 bp downstream
Tssr146998	transcription start site region 146998	1346 bp downstream