rs51987797 SNP Detail

Summary

• ID
  rs51987797
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29980350 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTGGGGTC GGGAACAACA
  CCGCCCTACT CTTGCCTATA CAAATAGTGA GGTTTAGGAT TGCGAAGATT GTAGCCAGCT
  GCTCTCCATC CCGTGATTGG GGCGTAGCCG CGGTAGCACG AGGAACATTT TGTACGCATG
  CGCCCTCAGT TTCCCCTGTC ACGTGTTGCA GTGTTGCTCT TCCCTGGGAT GACGTGAGGC
  R
  GATGGATTGC TCGGGGACCC GGACAGGGTT TGGCCCAGAC TCAAGTGTTA TTGCTGACTG
  GGCAGGACTG GCCAGGGTAG GACAGCTACA CATAAGTACA TTAGGGCTCC AACACTTTGG
  GGCGCCTGGG CAGGGACAAT TGGCCTGGGA GATTCGAACA TGGGGCGTGG CCCTGGGAGG
  GGCGGGGTTG GTCCAGCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60991470	NES16140582	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51987797					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60991470	NES16140582	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29980350 () rs orientation: forward

Symbol	Name	Function Class
1700020L13Rik	RIKEN cDNA 1700020L13 gene	108 bp upstream
Cpgi18786	CpG island 18786	within coordinates
Rr400235	regulatory region 400235	358 bp downstream
Rr644765	regulatory region 644765	816 bp distal
Rr644766	regulatory region 644766	861 bp distal
Rr644767	regulatory region 644767	28 bp distal
Rr644768	regulatory region 644768	within coordinates
Rr644769	regulatory region 644769	920 bp proximal
Rr644770	regulatory region 644770	1311 bp proximal
Tssr65667	transcription start site region 65667	783 bp downstream
Tssr65668	transcription start site region 65668	737 bp downstream
Tssr65669	transcription start site region 65669	341 bp downstream
Tssr71721	transcription start site region 71721	501 bp upstream
Wdr62	WD repeat domain 62	506 bp upstream