rs51988289 SNP Detail

Summary

• ID
  rs51988289
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:88187328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C ATGACTGTAC ATCTATCATT TCAGGAATTA TTATGAAGCA
  GCTGTCTGCC CATTATCTGA AAAAGATGGA CCTTGTGGGA CTTCGCAATT GTTAAGTAGC
  G
  TGGACTCAGT GGTAGAAATG GATGGCTCAC TAGGGGCTTG GTGACCCTTG GCTGTGGGCT
  AATGGGGGAA GAAGGAGTAG CTGGGCCTAG AGAGAACAAT T                    
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss144898878	ENSMUSSNP6863167	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs51988289					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:88187328 () rs orientation: forward

Symbol	Name	Function Class
Mroh2a	maestro heat-like repeat family member 2A	within coordinates
Rr18061	regulatory region 18061	328 bp distal
Rr35066	regulatory region 35066	within coordinates
Tssr7958	transcription start site region 7958	481 bp downstream
Tssr7959	transcription start site region 7959	461 bp downstream
Tssr7960	transcription start site region 7960	438 bp downstream
Tssr7961	transcription start site region 7961	409 bp downstream
Tssr7962	transcription start site region 7962	249 bp downstream
Tssr7963	transcription start site region 7963	219 bp downstream
Tssr7964	transcription start site region 7964	192 bp downstream
Tssr7965	transcription start site region 7965	168 bp downstream