rs51988352 SNP Detail

Summary

• ID
  rs51988352
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:45868010 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGGCTGCC CCAGCTCACT
  TCCTCCTCTG CTGAGAAAAG GGAAGTAATG GCTTGGCCTC AGCCTCCCCA ACAGTTACCT
  CCTGAGCTCC CCAAATTCTT CTTGCTGTCC CATCTCTTGA TCTCCCTTTT CTCCCTTAGG
  TCCAGCTGGA ATCAGGTGCA GCTGGACTGT GAGGCTATCA AGTGTGTAGG TGTCAAGTGC
  W
  GAAGAGGTGA CTGGGCTTTG TGGGTGTTAG AGCAGGGGCA GCTGGAGTGC TAGCTAGATG
  AGAGAGACGC TGGGATGCAG GGGGTACCTG TCCTGACCTG CTTGTTGGAG ATGTAGGGGT
  CTTGGTTGGG TACTAGCAAA GATAGTCTCC ATCCTGTGAG CAGGAGAGAG GCCTTTTGTA
  TTTCAGGCGC CAGTCACAAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60259839	NES15755753	PERLEGEN	MM_PANEL2	f	SNP	A	A	T	T	A	T	A	A	A	A		A	A	A	A		A
ss325403390	CHEV_17_45694033	CHEVERUD	SCREENING_POP	f	SNP											T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51988352					SNP	A	A	T	T	A	T	A	A	A	A	T	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60259839	NES15755753	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:45868010 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9193	CpG island 9193	768 bp distal
Nfkbie	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	within coordinates
Rr370254	regulatory region 370254	1225 bp upstream
Rr405302	regulatory region 405302	1311 bp downstream
Rr527428	regulatory region 527428	1363 bp distal
Rr527429	regulatory region 527429	within coordinates
Tssr144787	transcription start site region 144787	1411 bp downstream
Tssr144788	transcription start site region 144788	1370 bp downstream
Tssr144789	transcription start site region 144789	1338 bp downstream
Tssr144790	transcription start site region 144790	1285 bp downstream
Tssr144791	transcription start site region 144791	1267 bp downstream
Tssr144792	transcription start site region 144792	1184 bp downstream
Tssr144793	transcription start site region 144793	814 bp downstream