rs51988472 SNP Detail

Summary

• ID
  rs51988472
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:55145864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GACAC CATGAAAGGC CAGTAGAGGT
  C
  ATTGGTGAGT GTGCAGACTG TTGAT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133207712	ENSMUSSNP6134405	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss321805429	CHEV_6_55118873	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51988472					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:55145864 () rs orientation: forward

Symbol	Name	Function Class
Gm34358	predicted gene, 34358	1685 bp downstream
Inmt	indolethylamine N-methyltransferase	1748 bp downstream
Rr136023	regulatory region 136023	1264 bp distal
Rr136024	regulatory region 136024	737 bp proximal
Rr144444	regulatory region 144444	1443 bp proximal
Rr149929	regulatory region 149929	1172 bp distal