rs51989017 SNP Detail

Summary

• ID
  rs51989017
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:76370818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGCA AGCAGCTTTG TCTTCTGGAT
  G
  TTTTAACCAA AGAACATTAG AGGTG                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss146590167	ENSMUSSNP2002041	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51989017					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:76370818 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14391	CpG island 14391	1808 bp distal
Gm42303	predicted gene, 42303	within coordinates
Ptprd	protein tyrosine phosphatase receptor type D	within coordinates
Rr101140	regulatory region 101140	1017 bp distal
Rr101141	regulatory region 101141	within coordinates
Tssr37647	transcription start site region 37647	1670 bp downstream
Tssr37648	transcription start site region 37648	1118 bp downstream
Tssr42164	transcription start site region 42164	1966 bp upstream