rs51993671 SNP Detail

Summary

• ID
  rs51993671
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:98937470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCCTACACC AGCAGTTCGT AGGGTTGGGG GCACAGCTCA
  AATGGCAGAA TGCTTTCCTG TGTGCTCATA GTTTGATCCC TGTGCCACAT AAGAGACACA
  R
  TGGTATGCTA ATGTGCACCA CTTTCCTATA ATCCAGCACT GGGGCTGTAG AGGCAGGCAG
  TGAGAAACTC AAGACCACTC AAAGCCAGCT TAGATACAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148463525	ENSMUSSNP2793955	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
ss325079639	CHEV_15_98870020	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51993671					SNP	G	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:98937470 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7689	CpG island 7689	517 bp proximal
Gm41399	predicted gene, 41399	1647 bp upstream
Gm62755	predicted gene, 62755	976 bp downstream
Rr509290	regulatory region 509290	445 bp proximal
Rr509291	regulatory region 509291	896 bp proximal
Rr509292	regulatory region 509292	1412 bp proximal
Tuba1c	tubulin, alpha 1C	1484 bp downstream