rs51994386 SNP Detail

Summary

• ID
  rs51994386
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:91053764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAGAGTAG AACAGCTGTT
  ATTTAGGTTT CAGTGTTTGT AAACTGTATG TACAACATTT TTGATGCTGG ATTTCAATGT
  AATGTTGTGA GTAACCCTTG GACATTTTAT GTCTTCCTCG TAAGGCACAG TGCCTTGCTT
  AGCAATTGTT TTGTCATGCC TTTTCGTGTC TTGAAGTGGA CACATTTATT TATTCATGTA
  Y
  TTTTACAAAT AACAAAAAAT AAAAACGTCT GTTAAAAAAA AAATCCCGTG CTTAAGTTTG
  TTTTATATAT CTCAATATTT TATTCTTCCA TCGTATTGAA GGTGTCAGGA ATGCTTAAGA
  AACCATGTTT CCTGCAGCAA CAGCTACTAG CTGGAGTCTC CCTTGTTTTT GTCAAGAAGG
  CACACTTGAT GCCTTTCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61198240	NES16702754	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51994386					SNP	T	T	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61198240	NES16702754	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91053764 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	within coordinates
Tssr47227	transcription start site region 47227	1831 bp downstream
Tssr47228	transcription start site region 47228	1768 bp downstream
Tssr47229	transcription start site region 47229	1747 bp downstream
Tssr47230	transcription start site region 47230	1722 bp downstream
Tssr47231	transcription start site region 47231	1692 bp downstream
Tssr47232	transcription start site region 47232	1545 bp downstream
Tssr47233	transcription start site region 47233	1495 bp downstream
Tssr47234	transcription start site region 47234	1460 bp downstream
Tssr47235	transcription start site region 47235	702 bp downstream
Tssr47236	transcription start site region 47236	663 bp downstream
Tssr47237	transcription start site region 47237	643 bp downstream
Tssr47238	transcription start site region 47238	584 bp downstream
Tssr47239	transcription start site region 47239	579 bp downstream
Tssr47240	transcription start site region 47240	560 bp downstream
Tssr47241	transcription start site region 47241	531 bp downstream
Tssr47242	transcription start site region 47242	506 bp downstream
Tssr47243	transcription start site region 47243	488 bp downstream
Tssr47244	transcription start site region 47244	449 bp downstream
Tssr47245	transcription start site region 47245	432 bp downstream
Tssr47246	transcription start site region 47246	378 bp downstream
Tssr47247	transcription start site region 47247	324 bp downstream
Tssr47248	transcription start site region 47248	265 bp downstream
Tssr47249	transcription start site region 47249	204 bp downstream
Tssr47250	transcription start site region 47250	66 bp downstream
Tssr47251	transcription start site region 47251	1 bp downstream
Tssr47252	transcription start site region 47252	41 bp upstream
Tssr51812	transcription start site region 51812	1678 bp upstream
Tssr51813	transcription start site region 51813	1661 bp upstream
Tssr51814	transcription start site region 51814	687 bp upstream
Tssr51815	transcription start site region 51815	641 bp upstream
Tssr51816	transcription start site region 51816	608 bp upstream