rs51995197 SNP Detail

Summary

• ID
  rs51995197
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102490100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAATTGTCC ACGGAGCCTG
  CAGGAAACAC TGCCTGGGCT GCAAGGAGGG GACCAGTTGG AATGAATGAG CCAGGATCAG
  AGCCGGGGCG GGGCGAAGAG AAGCGCACAG CCTTGAATGC TAGCTTTGGG CGCGCACGGG
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGGGGTGA TGATGGCAAG
  M
  CCCCAGCCCA AGAGGTCTTT GCCTTTGGAT ATTAGAATTT CCCTGGCGAG CTGCAAGGAA
  GAGTGGAAGA GATTTGGGTG CTTCCCGAGA GGAGGGAAGG AAACCTGTAG CTTGGAGCAA
  GAGTTTCCAA ACTATCTGGA CTATCACTGG CATTTTTATT TTGCCTGTGG CCTTGGAGGC
  GCCCCTCGCC TCTTGAGGCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147119770	ENSMUSSNP2258284	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C	A
ss320439904	CHEV_2_102499912	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51995197					SNP	A	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102490100 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11978	CpG island 11978	within coordinates
Gm57687	predicted gene, 57687	within coordinates
Rr561713	regulatory region 561713	1086 bp distal
Rr561714	regulatory region 561714	943 bp distal
Rr561715	regulatory region 561715	464 bp distal
Rr561716	regulatory region 561716	within coordinates
Slc1a2	solute carrier family 1 (glial high affinity glutamate transporter), member 2	within coordinates
Tssr19098	transcription start site region 19098	1516 bp downstream
Tssr19099	transcription start site region 19099	1444 bp downstream
Tssr19100	transcription start site region 19100	1175 bp downstream
Tssr19101	transcription start site region 19101	1086 bp downstream
Tssr19102	transcription start site region 19102	1060 bp downstream
Tssr19103	transcription start site region 19103	1013 bp downstream
Tssr19104	transcription start site region 19104	991 bp downstream
Tssr19105	transcription start site region 19105	921 bp downstream
Tssr19106	transcription start site region 19106	903 bp downstream
Tssr19107	transcription start site region 19107	883 bp downstream
Tssr19108	transcription start site region 19108	847 bp downstream
Tssr19109	transcription start site region 19109	805 bp downstream
Tssr19110	transcription start site region 19110	523 bp downstream