rs51995233 SNP Detail

Summary

• ID
  rs51995233
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:84564981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCCGCCTA TGGCCCAAGG
  CTACACTGCT TCCTCCTTTC TTTCTCCCTT TTATTTTGGT GTGGGGGTGG AGCCCAGGGA
  TGTGTCACTG AGTATTATCC TACAGCCCCC TGGTAGCCCT GCTTCACCTC GGTGACACTC
  AGCTGTTTGT CTGCTCTGCT CACTGTCTTC CATTCATAGC CAGCCACAGC TACTGCGTTC
  Y
  TCTCATTTCC AGAGTTTTGT GATGGTGGGC AGGCTCGAGA ACCTGACTCC AGGTCAAGAT
  GGCTCGGCTT GCGAAGGTGC TTGCCGCAAA GCCTGGAGAC CTGAATTAGG TTCCTGGGAC
  TCATATGGTA GCACAGAACT GACTCCAAGT TGTCCTCTGA ACTCCCATGT GTGCTATGGT
  ATGTGCTCCT ACATACACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135427412	ENSMUSSNP6437452	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51995233					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:84564981 () rs orientation: forward

Symbol	Name	Function Class
Gm37240	predicted gene, 37240	Intron
Rr579124	regulatory region 579124	1893 bp distal
Rr579125	regulatory region 579125	1693 bp distal
Rr579126	regulatory region 579126	within coordinates
Rr579127	regulatory region 579127	480 bp proximal
Rr579128	regulatory region 579128	1380 bp proximal