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rs51995233 SNP Detail
Summary
  • ID
    rs51995233
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr3:84564981 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GCCCCGCCTA TGGCCCAAGG
    CTACACTGCT TCCTCCTTTC TTTCTCCCTT TTATTTTGGT GTGGGGGTGG AGCCCAGGGA
    TGTGTCACTG AGTATTATCC TACAGCCCCC TGGTAGCCCT GCTTCACCTC GGTGACACTC
    AGCTGTTTGT CTGCTCTGCT CACTGTCTTC CATTCATAGC CAGCCACAGC TACTGCGTTC
    Y
    TCTCATTTCC AGAGTTTTGT GATGGTGGGC AGGCTCGAGA ACCTGACTCC AGGTCAAGAT
    GGCTCGGCTT GCGAAGGTGC TTGCCGCAAA GCCTGGAGAC CTGAATTAGG TTCCTGGGAC
    TCATATGGTA GCACAGAACT GACTCCAAGT TGTCCTCTGA ACTCCCATGT GTGCTATGGT
    ATGTGCTCCT ACATACACAC                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
DBA/2J
ss135427412 ENSMUSSNP6437452 ENSEMBL ENSEMBL_Sanger f SNP C T T
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
DBA/2J
rs51995233 SNP C T T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:84564981 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm37240 predicted gene, 37240 within coordinates
Rr68541 regulatory region 68541 1581 bp distal
Rr68542 regulatory region 68542 420 bp proximal
Rr68543 regulatory region 68543 1220 bp proximal
Rr76452 regulatory region 76452 1311 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory