rs51996042 SNP Detail

Summary

• ID
  rs51996042
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:87958627 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAATTCTG TACTTGGGAG
  GTAGAGGTAG GAGGGTTAGC GCTTCCGAGG TAGCTGCTGT GTATCTGCTC TGCCACTGAC
  TGGCCTTGAC TATCCAACAC CCTATCTGAA AGAAATAAAA ATCAAACTTA AGAAACGTGG
  GTAAGTCTTG TGTTATGGGA GGCTAGGGAA TGAGTGTGGT TTTGAAGGCA GCCCAGGCTA
  Y
  GTAGACACAG AGTTCCAGGC TACCCAGCGA GACCCTGACC ATCAGTAACA TATTGTGAGA
  GTTGGGGTAG TGTGGGGTGG TTGGGAGGGT TGTTCAGTGG TACTATGTGC TTACCATGTG
  AGAGGCCCTG TGTCCAATTT GCACTACCAG TGTCTTAGTC AGGGTTTCTA TTCCTGCACA
  AACATCATGA CCAAGAAGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60290168	NES15780149	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51996042					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60290168	NES15780149	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:87958627 () rs orientation: forward

Symbol	Name	Function Class
Epcam	epithelial cell adhesion molecule	72 bp downstream
Rr333876	regulatory region 333876	1174 bp proximal
Tssr146207	transcription start site region 146207	751 bp downstream
Tssr146208	transcription start site region 146208	733 bp downstream
Tssr146209	transcription start site region 146209	669 bp downstream
Tssr146210	transcription start site region 146210	619 bp downstream
Tssr146211	transcription start site region 146211	372 bp downstream