rs51996360 SNP Detail

Summary

• ID
  rs51996360
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:91987804 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGTTCTA TAGCACAAAC
  ATGGTATGTC TACTCAAAAT ATAAGTTGAA ACCTGACTTC CAAAGCAACT GTGCTATGTG
  GTAGAAGGCA CTGCTCTAGG AAAACAGGCT TCTTTCTCAC ACAGAGCACG CATGGTTGCC
  ATAAAGACAG CTCTCCTGTC ATGCTTACAC AGCTAATGTC CACCATGTTA CATGGAGCAA
  Y
  GTACCTTTAC CAGAGAATGG CCAGATGCCA GCAACTTGTT TCTGAGCTTT CCCATTGCCT
  TCTATATAAA TTAGCCAGGT TTGGAGTATT CTGTTACAAC AACAGAAAAT CAAGCTAATA
  GACATAAAGT GCCAACTTCC TGTGTGAGTG CTGACCACCC GTGTGACTGA GGTACATTTT
  ACTGTTGTTA CAATATGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60764380	NES16407871	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51996360					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60764380	NES16407871	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:91987804 () rs orientation: forward

Symbol	Name	Function Class
Hdac4	histone deacetylase 4	within coordinates
Rr18400	regulatory region 18400	597 bp proximal
Rr23700	regulatory region 23700	404 bp distal
Rr35319	regulatory region 35319	within coordinates
Rr366965	regulatory region 366965	1143 bp downstream
Tssr8116	transcription start site region 8116	1134 bp downstream
Tssr8117	transcription start site region 8117	1105 bp downstream