rs51996980 SNP Detail

Summary

• ID
  rs51996980
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130487226 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTCCTACA AACAGGCTAT
  CTTCTTTATT AATCTGAATG GTTCATCTCC ATTGTCAGTT TGGTAAGATC TCACATCACC
  TGGGTGTGTC TAGGCGAGAT TATCTTGATT AGGTAGCTGG GGTTGGAAGA GCTGCCCCCT
  GTGTGGCACA ACTCGGTGGG GTGGGTCCTG GACCACAGAA GAAGGGGGAG GCTGGCTGAG
  M
  GGCCACAGCG CTCCCTTGAA GGAAGGACTT CATTGTAGGG TGGAGCAAGA TGGCAACCTC
  AGATCCTTTA TCAGGTCTAC CTCAGCTCCA CAGGCAAATT GTGCCAGTCT TGAGATGGTC
  TCCAACCCAG GTCACAACAG CAGCCCAGTC AGTGTCTAGC CATACTGCCC TGCCAGCCAA
  TGACATCTTG ACTTCACCTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61080657	NES16590414	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs51996980					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61080657	NES16590414	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130487226 () rs orientation: forward

Symbol	Name	Function Class
Gm36373	predicted gene, 36373	862 bp upstream
Gm65113	predicted gene, 65113	within coordinates
Rr398016	regulatory region 398016	461 bp upstream
Rr585191	regulatory region 585191	1430 bp distal
Rr585193	regulatory region 585193	1787 bp distal
Rr585194	regulatory region 585194	549 bp proximal
Rr585195	regulatory region 585195	636 bp proximal
Rr585196	regulatory region 585196	1164 bp proximal