rs51997617 SNP Detail

Summary

• ID
  rs51997617
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45013664 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCACTGTAA CTTAGCTACT
  AATAAAAATC TGTGGCTCGA GCAGCTTCCA GAGAGGCAAT GACTGGGTGA GTGGGTATTC
  TATTGAATAT ACCATTACAT TACAAGCCAG CATGTAATGG CATGGGACGG TTATATATCA
  AGAAGGTTGT AAGGGGAAGT TCGCAGTATG ATCTCAACTA CAAGAAGGAA ACAATACGAT
  R
  TTCATGTCAG AAGCCTGTGG GCCGGGCATG TTTTGTCTGA GAGTCACTTA GACTGTCATT
  GACAGAGGAT CTGAAGAATA GTTCTGAGGA GTTATTAGAC AATAAAGATA AGATCCTGTC
  CGGTAAGGGA ACCACTTGGA AACCTGTAGT ATCTGATTCA TTTAACAGTG AGAATATACA
  ACTTTACAAT CATGGTTTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss61388973	NES16766741	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs51997617					SNP	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61388973	NES16766741	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45013664 () rs orientation: forward

Symbol	Name	Function Class
Jaml	junction adhesion molecule like	within coordinates
Rr677840	regulatory region 677840	280 bp proximal
Tssr84725	transcription start site region 84725	508 bp upstream
Tssr84726	transcription start site region 84726	1470 bp upstream
Tssr84727	transcription start site region 84727	1500 bp upstream
Tssr84728	transcription start site region 84728	1528 bp upstream