rs51998754 SNP Detail

Summary

• ID
  rs51998754
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:4760520 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGT GCAAATCAAG GTTTTCCTGA
  S
  TTTCTCGCTG TGTGTGTTCT GCATT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61339098	NES16947264	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	C		C	G	C		C
ss323874761	CHEV_12_4717326	CHEVERUD	SCREENING_POP	f	SNP					C				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51998754					SNP	G	G	G	C	C	C	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61339098	NES16947264	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:4760520 () rs orientation: forward

Symbol	Name	Function Class
Gm53750	predicted gene, 53750	within coordinates
Itsn2	intersectin 2	within coordinates
Rr260648	regulatory region 260648	720 bp distal
Rr263604	regulatory region 263604	1136 bp distal
Tssr112576	transcription start site region 112576	1816 bp upstream
Tssr112577	transcription start site region 112577	1835 bp upstream
Tssr115645	transcription start site region 115645	1695 bp downstream