rs51999984 SNP Detail

Summary

• ID
  rs51999984
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:15420084 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGCATGGCC TGCCATACAG GCTGTCCTCA CTCCCAGAGA
  GGCTCTGAGA TTAAACCAGA CATCAATACA CAGCAACAGC ACATGAGTCG AACACCTCAC
  R
  GCATCCTCAG GATCCAGACC CTTGCCAGCT ACTGAGATTC ACAGTGTTCC ACAGTCATGG
  GATCTCACGG GCTGGGAGTT CTCATAGCTC TGGGGTCCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss60539070	NES16556277	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	G	G		A	A		A
ss145202506	ENSMUSSNP2444609	ENSEMBL	ENSEMBL_Sanger	f	SNP								A
ss325306441	CHEV_17_15336786	CHEVERUD	SCREENING_POP	f	SNP											A			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs51999984					SNP	A	A	A	A	A	A	G	A	G	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60539070	NES16556277	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:15420084 () rs orientation: forward

Symbol	Name	Function Class
Gm35502	predicted gene, 35502	within coordinates
Rr329518	regulatory region 329518	684 bp distal
Rr334312	regulatory region 334312	within coordinates