rs52000195 SNP Detail

Summary

• ID
  rs52000195
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:114954668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTAGGAAG TCTGGATGGG
  GTCGCTGGCT CAGAAACTCC TGAGCGCCTA AAACACTGAA GTGACAGTCA GATACCGTCT
  CCACGCTGCG AATAAGAACC CGGATCCCAC ACTGGATGGA GGGGCCGCAT AGGTTAGCCT
  GGGGAAGGCC ACCCTGCCGG GTCACACAAG AGGTCGCAGC ACTGGGATCC AAAAGCAGAG
  Y
  AAACTTTTGT GGGTGCAGGA GGCGTGGCGG GGCGGAGCGA AGTGTACGCA GGCGCAGTGT
  CCACACGCCC GGGGTTGAGC ACCACCCAGA AGGTGGAGCA TCCGGCTGCG CATGCGCTCT
  GAGTCACCGG CGCCTCTAGG GGTTGGAGAA CTGGCTTCGC GGTGTGTAGC GGGATGGTTC
  CTAGGTGCCA GGTAAGAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62050113	NES17145361	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52000195					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62050113	NES17145361	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:114954668 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6123	CpG island 6123	within coordinates
Gm34790	predicted gene, 34790	within coordinates
Mocs2	molybdenum cofactor synthesis 2	39 bp upstream
Rr280966	regulatory region 280966	within coordinates
Rr404003	regulatory region 404003	within coordinates
Tssr121205	transcription start site region 121205	100 bp upstream