rs52000234 SNP Detail

Summary

• ID
  rs52000234
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:130552984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAAATCAA CTGCTTTAAT
  AACGCCGCGA GGAGTCGAGT ACATACCCAC TGCAATGACT CGATTACTCA AGCGTAGCCC
  CCTTATGCGT TGTAGTCTTC ATTAGGAGCA CCTTTGGGGT GGGGCCACTA ACACTGACTG
  TGCCCTGAAG TCTGCATGAC AGTGATGCTC CACAGAAGGT CTGTTGGCGT AAGGACAAGC
  R
  CAGGGTACCC TTTTCTTCCT GGAAATTGGG GCAGGGGGCT GGATTAAAGG GTGTGTGAGA
  TTGAAAAATA AAAATGGATA GATGGGAGGA GGAGGAGGAG GAGGGAAGTG GGATCCAGAG
  AGAACAATGA CTTCTCAAGG TCACGTACCT TCTTGGGGGA TGGATTCTGA ATAGTGAAGA
  CTTCGAACAG GCAACCACCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61080244	NES16598336	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs52000234					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61080244	NES16598336	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130552984 () rs orientation: forward

Symbol	Name	Function Class
Gm42997	predicted gene 42997	within coordinates
Gm43522	predicted gene 43522	955 bp upstream
Gm43524	predicted gene 43524	1577 bp downstream
Gm65129	predicted gene, 65129	within coordinates
Rr585206	regulatory region 585206	197 bp distal
Rr585207	regulatory region 585207	1359 bp proximal
Rr585208	regulatory region 585208	1590 bp proximal