rs52000559 SNP Detail

Summary

• ID
  rs52000559
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:81492237 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAAGGGAG CTTGGCTATA
  AGGCAAACAA CTACTTTAAA ATCTAAAACT ACTCACCTTC CAGTAATTTT GTTTAATCAT
  GGTAGAAATT CCTTCAGTAT TCATAGTGTT ATATGGAACC CATTTTTTAC ATATATTATT
  ACACAGTGTG TGTGAAGTTA GTTAAGATGA CATTTGGCTT ACCCAAACCA AGTATTAGGA
  R
  AGATTATAGC CCAGAAACTA ATCCTCTCTC TTCAGAACAG AACATCTCAC CACACAGAGA
  TTACTGGCTA GGCGCACTTG TTATATGTTT CCCTGTCAAA ACCTTAATAA GTTTTCTACA
  TGTAAGCAAT TCTCGATTTC ACAGTGGGAA AGAAAATGCA ATGGAACTAT CTAGATGTTG
  GTGTTTGTGC ACAAAGGTCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63200450	NES17462996	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	A	G	A	A	A	G	A	A	G	G
ss147604583	ENSMUSSNP6673036	ENSEMBL	ENSEMBL_Sanger	f	SNP		G							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs52000559					SNP	G	G	A	A	A	G	A	G	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63200450	NES17462996	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:81492237 () rs orientation: forward

Symbol	Name	Function Class
D18Mit2	DNA segment, Chr 18, Massachusetts Institute of Technology 2	406 bp distal
D18Mit3	DNA segment, Chr 18, Massachusetts Institute of Technology 3	406 bp distal
Gm30288	predicted gene, 30288	within coordinates